forked from 3rdparty/wrf-python
Browse Source
* Update constants.py Replace from numpy.asscalar to item() because numpy.asscalar causes FutureWarning. Deprecated since numpy version 1.16: Deprecated, use numpy.ndarray.item() instead. * Update decorators.py Because of the change in the structure of the "collections" module, I change a bit. * Update latlonutils.py To avoid FutureWarning, Function "Iterable" should import from collections.abc. * Update util.py To avoid FutureWarning, function "Iterable" and "Mapping" should be imported from collections.abc. * Restructuring repo (#150) * Restructured folders and env files and some docs in regards * Additional refactoring to file names * Github actions configured fully * Corrected ubuntu vs win64 bug in CI * Windows build fix * Trying to fix Windows build tests * Continue fixing windows build tests * ANother fixing attempt on windows build tests * Stil attempting to fix * Another attempt to fix * Little correction in config * Still trying to get windows build tests done * Maybe this time * try a different windows build bat * Another attempt * Trying vs2015 installation * again * Gave up windows build tests * Remove CircleCI config * Corrected env namein docs * Sorted env files alphabetically * Modified meta.yml and removed unnecessary meta.yaml files * Corrected constants numpy item * Numpy item use Co-authored-by: muchojp <61620767+muchojp@users.noreply.github.com> Co-authored-by: Michaela Sizemore <43652875+michaelavs@users.noreply.github.com>main 1.3.2.6
Orhan Eroglu
4 years ago
committed by
GitHub
16 changed files with 106 additions and 308 deletions
@ -1,12 +0,0 @@
@@ -1,12 +0,0 @@
|
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name: wrf-python |
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channels: |
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- conda-forge |
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dependencies: |
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- gcc_linux-64 |
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- gfortran_linux-64 |
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- setuptools |
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- python |
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- numpy |
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- wrapt |
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- xarray |
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- netcdf4 |
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@ -1,99 +0,0 @@
@@ -1,99 +0,0 @@
|
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# Python CircleCI 2.0 configuration file |
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# |
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# Check https://circleci.com/docs/2.0/language-python/ for more details |
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# |
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version: 2 |
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jobs: |
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lint: |
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docker: |
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- image: circleci/python:3.6.1 |
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|
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working_directory: ~/repo |
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steps: |
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- checkout |
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- run: |
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name: install pycodestyle |
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command: | |
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sudo pip install pycodestyle |
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- run: |
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name: run pycodestyle |
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command: | |
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pycodestyle src test |
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|
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build: |
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docker: |
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# specify the version you desire here |
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# use `-browsers` prefix for selenium tests, e.g. `3.6.1-browsers` |
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- image: circleci/python:3.6.1 |
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|
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# Specify service dependencies here if necessary |
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# CircleCI maintains a library of pre-built images |
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# documented at https://circleci.com/docs/2.0/circleci-images/ |
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# - image: circleci/postgres:9.4 |
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working_directory: ~/repo |
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steps: |
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- checkout |
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# Download and cache dependencies |
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- restore_cache: |
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keys: |
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- v1-dependencies-{{ checksum ".circleci/conda_env.yml" }} |
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|
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- run: |
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name: install conda and dependencies |
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command: | |
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test -d ~/miniconda3 && exit 0 |
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echo "Installing a fresh version of Miniconda." |
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MINICONDA_URL="https://repo.continuum.io/miniconda" |
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MINICONDA_FILE="Miniconda3-latest-Linux-x86_64.sh" |
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curl -L -O "${MINICONDA_URL}/${MINICONDA_FILE}" |
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bash $MINICONDA_FILE -b |
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source ~/miniconda3/bin/activate root |
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conda env create -f .circleci/conda_env.yml |
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|
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- save_cache: |
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paths: |
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- ~/miniconda3 |
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key: v1-dependencies-{{ checksum ".circleci/conda_env.yml" }} |
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|
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- run: |
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name: build wrf-python |
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command: | |
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source ~/miniconda3/bin/activate wrf-python |
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unset FFLAGS |
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unset LDFLAGS |
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unset CFLAGS |
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cd fortran/build_help |
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$FC -o sizes -fopenmp omp_sizes.f90 |
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LD_LIBRARY_PATH=~/miniconda3/envs/wrf-python/lib python sub_sizes.py |
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cd .. |
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$FC -E ompgen.F90 -fopenmp -cpp -o omp.f90 |
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cd .. |
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python setup.py config_fc --f90flags="-mtune=generic -fopenmp" build_ext --libraries="gomp" build |
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python setup.py install --single-version-externally-managed --record=record.txt |
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|
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|
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# run tests! |
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# this example uses Django's built-in test-runner |
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# other common Python testing frameworks include pytest and nose |
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# https://pytest.org |
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# https://nose.readthedocs.io |
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- run: |
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name: run tests |
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command: | |
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source ~/miniconda3/bin/activate wrf-python |
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cd test/ci_tests |
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python utests.py |
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|
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- store_artifacts: |
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path: test-reports |
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destination: test-reports |
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workflows: |
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version: 2 |
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build_and_lint: |
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jobs: |
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- build |
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- lint |
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@ -0,0 +1,56 @@
@@ -0,0 +1,56 @@
|
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name: CI |
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on: |
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push: |
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pull_request: |
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workflow_dispatch: |
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# schedule: |
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# - cron: '0 0 * * *' # Daily “At 00:00” |
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|
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jobs: |
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test: |
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# if: | |
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# github.repository == 'NCAR/wrf-python' |
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name: Python (${{ matrix.python-version }}, ${{ matrix.os }}) |
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runs-on: ${{ matrix.os }} |
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defaults: |
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run: |
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shell: bash -l {0} |
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|
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strategy: |
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fail-fast: false |
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matrix: |
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os: [ "ubuntu-latest", "macos-latest"] |
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python-version: [ "3.6", "3.7", "3.8", "3.9" ] |
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|
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steps: |
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- name: Cancel previous runs |
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uses: styfle/cancel-workflow-action@0.9.0 |
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with: |
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access_token: ${{ github.token }} |
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- name: Checkout |
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uses: actions/checkout@v2 |
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with: |
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token: ${{ github.token }} |
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- name: Conda setup |
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uses: conda-incubator/setup-miniconda@v2 |
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with: |
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activate-environment: wrf_python_build |
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python-version: ${{ matrix.python-version }} |
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channels: conda-forge, ncar |
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- name: Conda install (Darwin) |
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if: matrix.os == 'macos-latest' |
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run: | |
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conda env update --file build_envs/Darwin.yml --prune |
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- name: Conda install (Linux) |
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if: matrix.os == 'ubuntu-latest' |
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run: | |
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conda env update --file build_envs/Linux.yml --prune |
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- name: Build WRF-Python |
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run: | |
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cd build_scripts |
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./gnu_omp.sh |
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cd .. |
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- name: Run tests |
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run: | |
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cd test/ci_tests |
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python utests.py |
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@ -1,20 +1,21 @@
@@ -1,20 +1,21 @@
|
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# Create full conda environment for development, including some useful tools |
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name: develop |
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name: wrf_python_build |
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channels: |
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- conda-forge |
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dependencies: |
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- python=3 |
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- wrapt |
||||
- numpy |
||||
- basemap |
||||
- cartopy |
||||
- clang_osx-64 |
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- gfortran_osx-64 |
||||
- jupyter |
||||
- matplotlib |
||||
- netcdf4 |
||||
- xarray |
||||
- jupyter |
||||
- numpy |
||||
- pycodestyle |
||||
- setuptools |
||||
- sphinx |
||||
- sphinx_rtd_theme |
||||
- pycodestyle |
||||
- cartopy |
||||
- basemap |
||||
- clang_osx-64 |
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- gfortran_osx-64 |
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- wrapt |
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- xarray |
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|
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@ -1,20 +1,21 @@
@@ -1,20 +1,21 @@
|
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# Create full conda environment for development, including some useful tools |
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name: develop |
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name: wrf_python_build |
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channels: |
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- conda-forge |
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dependencies: |
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- python=3 |
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- wrapt |
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- numpy |
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- basemap |
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- cartopy |
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- gcc_linux-64 |
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- gfortran_linux-64 |
||||
- jupyter |
||||
- matplotlib |
||||
- netcdf4 |
||||
- xarray |
||||
- jupyter |
||||
- numpy |
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- pycodestyle |
||||
- setuptools |
||||
- sphinx |
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- sphinx_rtd_theme |
||||
- pycodestyle |
||||
- cartopy |
||||
- basemap |
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- gcc_linux-64 |
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- gfortran_linux-64 |
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- wrapt |
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- xarray |
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|
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@ -1,19 +1,21 @@
@@ -1,19 +1,21 @@
|
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# Create full conda environment for development, including some useful tools |
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name: develop |
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name: wrf_python_build |
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channels: |
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- conda-forge |
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- msys2 |
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dependencies: |
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- python=3 |
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- wrapt |
||||
- numpy |
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- basemap |
||||
- cartopy |
||||
- jupyter |
||||
- m2w64-toolchain |
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- matplotlib |
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- netcdf4 |
||||
- xarray |
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- jupyter |
||||
- numpy |
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- pycodestyle |
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- setuptools |
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- sphinx |
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- sphinx_rtd_theme |
||||
- pycodestyle |
||||
- cartopy |
||||
- basemap |
||||
- m2w64-toolchain |
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- wrapt |
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- xarray |
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|
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@ -1,56 +0,0 @@
@@ -1,56 +0,0 @@
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{% set version = "1.3.2.5" %} |
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|
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package: |
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name: wrf-python |
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version: {{ version }} |
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|
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source: |
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git_url: https://github.com/NCAR/wrf-python |
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git_branch: develop |
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|
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build: |
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number: 0 |
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detect_binary_files_with_prefix: true |
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|
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requirements: |
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build: |
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- setuptools |
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- python |
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- numpy 1.11.* # [unix] |
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- numpy 1.14.* # [win] |
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- wrapt |
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- m2w64-toolchain # [win] |
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- gcc # [unix] |
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run: |
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- setuptools |
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- numpy >=1.11 # [unix] |
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- numpy >=1.14 # [win] |
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- python |
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- wrapt |
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- m2w64-gcc-libs # [win] |
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- libgfortran # [unix] |
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- libgcc # [unix] |
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- xarray |
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|
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test: |
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requires: |
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- setuptools |
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- netcdf4 |
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- xarray |
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source_files: |
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- test/ci_tests |
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imports: |
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- wrf |
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commands: |
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- cd test/ci_tests && python utests.py |
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|
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about: |
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home: https://github.com/NCAR/wrf-python |
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license: "UCAR" |
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license_file: '{{ environ["RECIPE_DIR"] }}/LICENSE' |
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summary: "Diagnostic and interpolation routines for WRF-ARW data." |
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|
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extra: |
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recipe-maintainers: |
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- michaelavs |
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- erogluorhan |
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@ -1,58 +0,0 @@
@@ -1,58 +0,0 @@
|
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{% set version = "1.3.2.5" %} |
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|
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package: |
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name: wrf-python |
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version: {{ version }} |
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|
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source: |
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fn: wrf-python-{{ version }}.tar.gz |
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url: https://github.com/NCAR/wrf-python/archive/{{ version }}.tar.gz |
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sha256: 9ca11366ed9a0d5e83e576ac80ce36be4748ba8a06752dac077277acec5e46d9 |
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|
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build: |
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number: 0 |
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detect_binary_files_with_prefix: true |
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|
||||
requirements: |
||||
build: |
||||
- setuptools |
||||
- python |
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- numpy 1.11.* # [unix] |
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- numpy 1.14.* # [win] |
||||
- wrapt |
||||
- m2w64-toolchain # [win] |
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- gcc # [unix] |
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run: |
||||
- setuptools |
||||
- numpy >=1.11 # [unix] |
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- numpy >=1.14 # [win] |
||||
- python |
||||
- wrapt |
||||
- m2w64-gcc-libs # [win] |
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- libgfortran # [unix] |
||||
- libgcc # [unix] |
||||
- xarray |
||||
|
||||
test: |
||||
requires: |
||||
- setuptools |
||||
- netcdf4 |
||||
- xarray |
||||
source_files: |
||||
- test/ci_tests |
||||
imports: |
||||
- wrf |
||||
commands: |
||||
- cd test/ci_tests && python utests.py |
||||
|
||||
about: |
||||
home: https://github.com/NCAR/wrf-python |
||||
license: "UCAR" |
||||
license_file: '{{ environ["RECIPE_DIR"] }}/LICENSE' |
||||
summary: "Diagnostic and interpolation routines for WRF-ARW data." |
||||
|
||||
extra: |
||||
recipe-maintainers: |
||||
- michaelavs |
||||
- erogluorhan |
||||
|
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@ -1,22 +0,0 @@
@@ -1,22 +0,0 @@
|
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# Create full conda environment for development, including some useful tools |
||||
name: testenv2 |
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channels: |
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- conda-forge |
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dependencies: |
||||
- python=2 |
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- wrapt |
||||
- numpy |
||||
- matplotlib |
||||
- netcdf4 |
||||
- xarray |
||||
- jupyter |
||||
- sphinx |
||||
- sphinx_rtd_theme |
||||
- pycodestyle |
||||
- cartopy |
||||
- basemap |
||||
- clang_osx-64 |
||||
- gfortran_osx-64 |
||||
- pynio |
||||
- ncl |
||||
|
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@ -1,22 +0,0 @@
@@ -1,22 +0,0 @@
|
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# Create full conda environment for development, including some useful tools |
||||
name: testenv3 |
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channels: |
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- conda-forge |
||||
dependencies: |
||||
- python=3 |
||||
- wrapt |
||||
- numpy |
||||
- matplotlib |
||||
- netcdf4 |
||||
- xarray |
||||
- jupyter |
||||
- sphinx |
||||
- sphinx_rtd_theme |
||||
- pycodestyle |
||||
- cartopy |
||||
- basemap |
||||
- clang_osx-64 |
||||
- gfortran_osx-64 |
||||
- pynio |
||||
- ncl |
||||
|
||||
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